Institut Charles Sadron Membre

Journal articles

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Dielectric permittivity of water confined in stacks of charged lipid layers: Extracting profiles from molecular dynamics simulations using a modified Poisson–Boltzmann equation

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Ludovic Gardré, Swen Helstroffer, Pierre Muller, Fabrice Thalmann, Thierry Charitat, Laurent Joly, Claire Loison

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The Journal of Chemical Physics, 2025, 163 (19), ⟨10.1063/5.0274252⟩

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Most organic and inorganic surfaces (e.g., glass or lipid membranes) become charged in aqueous solut .....

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DOI : 10.1063/5.0274252

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The Role of Confined Water in the Emergence of Electrostatic Strong Coupling As Revealed by Nanoseparated Charged Lipid Layers

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Swen Helstroffer, Ludovic Gardré, Giovanna Fragneto, Arnaud Hemmerle, Léo Henry, Laurent Joly, Fabrice Thalmann, Claire Loison, Pierre Muller, Thierry Charitat

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Journal of Physical Chemistry Letters, 2025, pp.8369-8376. ⟨10.1021/acs.jpclett.5c01538⟩

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This study investigates the interplay between Strong Coupling (SC) attraction and hydration repulsio .....

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DOI : 10.1021/acs.jpclett.5c01538

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Non-ideal mixing of lipids: A molecular dynamics perspective

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L. Berezovska, R. Kociurzynski, F. Thalmann

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The Journal of Chemical Physics, 2025, 162 (6), pp.065102. ⟨10.1063/5.0242522⟩

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Lipid membranes have complex compositions, and modeling the thermodynamic properties of multi-compon .....

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DOI : 10.1063/5.0242522

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Rotational and translational drags of a Janus particle close to a wall and a lipid membrane

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Vaibhav Sharma, Florent Fessler, Fabrice Thalmann, Carlos Marques, Antonio Stocco

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Journal of Colloid and Interface Science, 2023, 652, pp.2159-2166. ⟨10.1016/j.jcis.2023.09.026⟩

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Hypothesis: Measuring rotational and translational Brownian motion of single spherical particles rev .....

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DOI : 10.1016/j.jcis.2023.09.026

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Internal lipid bilayer friction coefficient from equilibrium canonical simulations

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Othmène Benazieb, Lisa Berezovska, Fabrice Thalmann

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Journal of Physics Communications, 2023, 7 (1), pp.011001. ⟨10.1088/2399-6528/acb313⟩

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A fundamental result in the theory of Brownian motion is the Einstein-Sutherland relation between mo .....

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DOI : 10.1088/2399-6528/acb313

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Stress overshoot, hysteresis, and the Bauschinger effect in sheared dense colloidal suspensions

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Dmytro Kushnir, Céline Ruscher, Eckhard Bartsch, Fabrice Thalmann, Pascal Hebraud

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Physical Review E , 2022, 106 (3), pp.034611. ⟨10.1103/PhysRevE.106.034611⟩

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The mechanical non-linear response of dense Brownian suspensions of polymer gel particles is studied .....

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DOI : 10.1103/PhysRevE.106.034611

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Coarse-grained description of monounsaturated peroxidized phospholipid bilayers

auteur

Yangyang Zhang, Donghui Liu, Yiyang Zhang, Yachong Guo, Wenfei Li, Fabrice Thalmann

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The Journal of Chemical Physics, 2022, 157 (8), ⟨10.1063/5.0096658⟩

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Lipid peroxides result from a reaction between cis-unsaturated lipid chains and singlet oxygen molec .....

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DOI : 10.1063/5.0096658

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Perturbing the catenoid: stability and mechanical properties of non-axisymmetric minimal surfaces

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Friedrich Walzel, Alice Requier, Kevin Boschi, Jean Farago, Philippe Fuchs, Fabrice Thalmann, Wiebke Drenckhan, Pierre Muller, Thierry Charitat

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Physical Review E , 2022, 106 (1), pp.014803. ⟨10.1103/PhysRevE.106.014803⟩

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Minimal surface problems arise naturally in many soft matter systems whose free energies are dominat .....

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DOI : 10.1103/PhysRevE.106.014803

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Rheology of sliding leaflets in coarse-grained DSPC lipid bilayers

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Othmene Benazieb, Claire Loison, Fabrice Thalmann

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Physical Review E , 2021, 104 (5), pp.054802. ⟨10.1103/PhysRevE.104.054802⟩

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Amphiphilic lipid bilayers modify the friction properties of the surfaces on top of which they are d .....

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DOI : 10.1103/PhysRevE.104.054802

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Ripple-like instability in the simulated gel phase of finite size phosphocholine bilayers

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Vivien Walter, Céline Ruscher, Adrien Gola, Carlos M Marques, Olivier Benzerara, Fabrice Thalmann

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Biochimica et Biophysica Acta:Biomembranes, 2021, 1863 (11), pp.183714. ⟨10.1016/j.bbamem.2021.183714⟩

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Atomistic molecular dynamics simulations have reached a degree of maturity that makes it possible to .....

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DOI : 10.1016/j.bbamem.2021.183714

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Molecular organization in hydroperoxidized POPC bilayers

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Helena Junqueira, André Pierre Schroder, Fabrice Thalmann, Andrey Klymchenko, Yves Mély, Mauricio S Baptista, Carlos M Marques

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Biochimica et Biophysica Acta:Biomembranes, 2021, 1863 (10), pp.183659. ⟨10.1016/j.bbamem.2021.183659⟩

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DOI : 10.1016/j.bbamem.2021.183659

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MLLPA: A Machine Learning-assisted Python module to study phase-specific events in lipid membranes

auteur

Vivien Walter, Céline Ruscher, Olivier Benzerara, Fabrice Thalmann

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Journal of Computational Chemistry, 2021, ⟨10.1002/jcc.26508⟩

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MLLPA is a new Python 3 module developed to analyse phase domains in a lipid membrane based on lipid .....

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DOI : 10.1002/jcc.26508

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Accumulation of styrene oligomers alters lipid membrane phase order and miscibility

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Mattia Morandi, Monika Kluzek, Jean Wolff, André Pierre Schroder, Fabrice Thalmann, Carlos Marques

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Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), pp.e2016037118. ⟨10.1073/pnas.2016037118⟩

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Growth of plastic waste in the natural environment, and in particular in the oceans, has raised the .....

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DOI : 10.1073/pnas.2016037118

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A machine learning study of the two states model for lipid bilayer phase transitions

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Vivien Walter, Céline Ruscher, Olivier Benzarara, Carlos M. Marques, Fabrice Thalmann

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Physical Chemistry Chemical Physics, 2020, 22 (34), pp.19147-19154. ⟨10.1039/D0CP02058C⟩

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We have adapted a set of classification algorithms, also known as Machine Learning, to the identific .....

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DOI : 10.1039/D0CP02058C

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Fluid bilayer phase in aqueous mixtures of fatty alcohol and cationic surfactant

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Tiago Espinosa, Fabien Leonforte, Luc Nicolas-Morgantini, Anne-Laure Fameau, Bernard Querleux, Fabrice Thalmann, Carlos M. Marques

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Physical Review Research, 2020, 2 (1), pp.013075. ⟨10.1103/PhysRevResearch.2.013075⟩

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Lamellar gel networks are creamy formulations extensively used in cosmetics and pharmaceutics. The b .....

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DOI : 10.1103/PhysRevResearch.2.013075

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Coarse-Grain Simulations of Solid Supported Lipid Bilayers with Varying Hydration Levels

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Florian Benedetti, Li Fu, Fabrice Thalmann, Thierry Charitat, Anne Rubin, Claire Loison

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Journal of Physical Chemistry B, 2020, 124 (38), pp.8287-8298. ⟨10.1021/acs.jpcb.0c03913⟩

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Supported lipid bilayers (SLBs) are a very popular system for the study of biomimetic membranes. Und .....

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DOI : 10.1021/acs.jpcb.0c03913

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titre

Coarse-Grained Model of Oxidized Membranes and Their Interactions with Nanoparticles of Various Degrees of Hydrophobicity

auteur

Chan-Fei Su, Holger Merlitz, Fabrice Thalmann, Carlos M. Marques, Jens-Uwe Sommer

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Journal of Physical Chemistry C, 2019, 123 (11), pp.6839-6848. ⟨10.1021/acs.jpcc.8b11909⟩

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We investigate the consequences of lipid peroxidation on the permeation properties of membranes comp .....

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DOI : 10.1021/acs.jpcc.8b11909

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Interaction of Giant Unilamellar Vesicles with the Surface Nanostructures on Dragonfly Wings

auteur

Samuel Cheeseman, Vi Khanh Truong, Vivien Walter, Fabrice Thalmann, Carlos M. Marques, Eric Hanssen, Jitraporn Vongsvivut, Mark J Tobin, Vladimir Baulin, Saulius Juodkazis, Shane Maclaughlin, Gary Bryant, Russell J Crawford, Elena A. Ivanova

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Langmuir, 2019, 35 (6), pp.2422-2430. ⟨10.1021/acs.langmuir.8b03470⟩

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The waxy epicuticle of dragonfly wings contains a unique nanostructured pattern that exhibits bacter .....

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DOI : 10.1021/acs.langmuir.8b03470

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Velocity of lateral drying fronts in film formation by drying of colloidal dispersions. A 2D simulation

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M. Nassar, A. Gromer, F. Thalmann, P. Hébraud, Y. Holl

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Journal of Colloid and Interface Science, 2018, 511, pp.424-433. ⟨10.1016/j.jcis.2017.10.010⟩

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DOI : 10.1016/j.jcis.2017.10.010

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titre

DPPC Bilayers in Solutions of High Sucrose Content

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Mattia Morandi, Mathieu Sommer, Monika Kluzek, Fabrice Thalmann, André P. Schroder, Carlos M. Marques

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Biophysical Journal, 2018, 114 (9), pp.2165-2173. ⟨10.1016/j.bpj.2018.04.003⟩

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The properties of lipid bilayers in sucrose solutions have been intensely scrutinized over recent de .....

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DOI : 10.1016/j.bpj.2018.04.003

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titre

Permeability of DOPC bilayers under photoinduced oxidation: Sensitivity to photosensitizer

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Isabel O L Bacellar, Mauricio S Baptista, Helena C Junqueira, Mark Wainwright, Fabrice Thalmann, Carlos M. Marques, André P Schroder

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Biochimica et Biophysica Acta:Biomembranes, 2018, 1860 (11), pp.2366-2373. ⟨10.1016/j.bbamem.2018.06.001⟩

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The modification of lipid bilayer permeability is one of the most striking yet poorly understood phy .....

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DOI : 10.1016/j.bbamem.2018.06.001

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titre

Kinetic evolution of DOPC lipid bilayers exposed to α-cyclodextrins

auteur

Monika Kluzek, Marc Schmutz, Carlos M. Marques, Fabrice Thalmann

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Soft Matter, 2018, 14 (28), pp.5800-5810. ⟨10.1039/C8SM01013G⟩

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Cyclodextrins are cyclic oligosaccharides capable of forming inclusion complexes with a variety of m .....

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DOI : 10.1039/C8SM01013G

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titre

Hemodynamic forces can be accurately measured in vivo with optical tweezers

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Sébastien Harlepp, Fabrice Thalmann, Gautier Follain, Jacky Goetz

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Molecular Biology of the Cell, 2017, 28 (23), pp.3252-3260. ⟨10.1091/mbc.E17-06-0382⟩

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Force sensing and generation at the tissue and cellular scale is central to many biological events. .....

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DOI : 10.1091/mbc.E17-06-0382

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titre

Simulation of Vertical Surfactant Distributions in Drying Latex Films

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A. Gromer, F. Thalmann, P. Hébraud, Y. Holl

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Langmuir, 2017, 33 (2), pp.561-572. ⟨10.1021/acs.langmuir.6b03913⟩

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DOI : 10.1021/acs.langmuir.6b03913

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titre

Horizontal drying fronts in films of colloidal dispersions: influence of hydrostatic pressure and collective diffusion

auteur

M. Nassar, A. Gromer, D. Favier, F. Thalmann, P. Hébraud, Y. Holl

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Soft Matter, 2017, 13 (48), pp.9162-9173. ⟨10.1039/C7SM01334E⟩

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The origin and time evolution of heterogeneities in drying colloidal films is still a matter of deba .....

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DOI : 10.1039/C7SM01334E

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Influence of a pH-sensitive polymer on the structure of monoolein cubosomes

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Monika Kluzek, Arwen Tyler, Shiqi Wang, Rongjun Chen, Carlos Marques, Fabrice Thalmann, John Seddon, Marc Schmutz

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Soft Matter, 2017, 13 (41), pp.7571-7577. ⟨10.1039/C7SM01620D⟩

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Cubosomes consist in submicron size particles of lipid bicontinuous cubic phases stabilized by surfa .....

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DOI : 10.1039/C7SM01620D

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Peroxidised phospholipid bilayers: insight from coarse-grained molecular dynamics simulations

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Yachong Guo, Vladimir Baulin, Fabrice Thalmann

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Soft Matter, 2016, 12 (1), pp.263-271. ⟨10.1039/C5SM01350J⟩

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An original coarse-grained model for peroxidised phospholipids is presented, based on the MARTINI li .....

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DOI : 10.1039/C5SM01350J

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Simulation of Latex Film Formation Using a Cell Model in Real Space: Vertical Drying

auteur

A. Gromer, M. Nassar, F. Thalmann, P. Hébraud, Y. Holl

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Langmuir, 2015, 31 (40), pp.10983-10994. ⟨10.1021/acs.langmuir.5b02845⟩

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DOI : 10.1021/acs.langmuir.5b02845

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Two-dimensional polymeric liquids and polymer stars: learning from conflicting theories

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Albert Johner, Fabrice Thalmann, Jörg Baschnagel, Hendrik Meyer, Sergei Obukhov, Joachim Wittmer

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Journal of Statistical Mechanics: Theory and Experiment, 2014, 2014 (4), pp.P04024. ⟨10.1088/1742-5468/2014/04/P04024⟩

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We discuss systems for which two carefully derived, yet conflicting, theories coexisted. Dense polym .....

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DOI : 10.1088/1742-5468/2014/04/P04024

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Physical Damage on Giant Vesicles Membrane as a Result of Methylene Blue Photoirradiation

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Omar Mertins, Isabel o.L. Bacellar, Fabrice Thalmann, Carlos m. Marques, Maurício s. Baptista, Rosangela Itri

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Biophysical Journal, 2014, 106 (1), pp.162-171. ⟨10.1016/j.bpj.2013.11.4457⟩

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DOI : 10.1016/j.bpj.2013.11.4457

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Lipid bilayer adhesion on sparse DNA carpets: Theoretical analysis of membrane deformations induced by single-end-grafted polymers

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F. Thalmann, V. Billot, C. Marques

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Physical Review E : Statistical, Nonlinear, and Soft Matter Physics [2001-2015], 2011, 83 (6), pp.061922. ⟨10.1103/PhysRevE.83.061922⟩

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We consider a single end-grafted polymer chain covered by a membrane in contact with a flat and rigi .....

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DOI : 10.1103/PhysRevE.83.061922

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Thermodynamic Approach to Phase Coexistence in Ternary Phospholipid-Cholesterol Mixtures

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Jean Wolff, Carlos Marques, Fabrice Thalmann

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Physical Review Letters, 2011, 106, pp.128104. ⟨10.1103/PhysRevLett.106.128104⟩

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We introduce a simple and predictive model for determining the phase stability of ternary phospholip .....

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DOI : 10.1103/PhysRevLett.106.128104

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Enhanced shear separation for chiral magnetic colloidal aggregates

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C. Mendoza, C. Marques, F. Thalmann

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Physical Review E : Statistical, Nonlinear, and Soft Matter Physics [2001-2015], 2010, 82 (6), pp.060401. ⟨10.1103/PhysRevE.82.060401⟩

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We study the designing principles of the simplest colloidal propeller, an architecture built from fo .....

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DOI : 10.1103/PhysRevE.82.060401

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Scraping and Stapling of End-Grafted DNA Chains by a Bioadhesive Spreading Vesicle to Reveal Chain Internal Friction and Topological Complexity

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Gi-Moon Nam, Marie Laure Hisette, Yuting Liang Sun, Thomas Gisler, Albert Johner, Fabrice Thalmann, André Schroder, Carlos Marques, Nam-Kyung Lee

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Physical Review Letters, 2010, 105 (8), ⟨10.1103/PhysRevLett.105.088101⟩

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Stained end-grafted DNA molecules about 20 μm long are scraped away and stretched out by the spread .....

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DOI : 10.1103/PhysRevLett.105.088101

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Surfactant Distribution in Waterborne Acrylic Films. 1. Bulk Investigation

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Céline Arnold, Fabrice Thalmann, Carlos Marques, Pascal Marie, Yves Holl

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Journal of Physical Chemistry B, 2010, 114 (28), pp.9135-9147. ⟨10.1021/jp103347n⟩

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The distribution of an anionic surfactant, sodium dodecyl sulfate (SDS), in waterborne acrylic films .....

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DOI : 10.1021/jp103347n

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A schematic model for molecular affinity and binding with Ising variables

auteur

Fabrice Thalmann

article

European Physical Journal E: Soft matter and biological physics, 2010, 31 (4), pp.441-454. ⟨10.1140/epje/i2010-10600-9⟩

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After discussing the relevance of statistical physics in molecular recognition processes, we present .....

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DOI : 10.1140/epje/i2010-10600-9

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Fast algorithms for classical X→0 diffusion-reaction processes

auteur

Fabrice Thalmann, Nam-Kyung Lee

article

J Chem Phys, 2009, 130 (7), pp.074102. ⟨10.1063/1.3072706⟩

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The Doi formalism treats a reaction-diffusion process as a quantum many-body problem. We use this se .....

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DOI : 10.1063/1.3072706

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Fast algorithms for classical X—>0 diffusion-reaction processes

auteur

Fabrice Thalmann, Nam-Kyung Lee

article

The Journal of Chemical Physics, 2009, 130 (7), pp.074102

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Measuring the Kinetics of Biomolecular Recognition with Magnetic Colloids

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Laetitia Cohen-Tannoudji, Emanuel Bertrand, Jean Baudry, Caroline Robic, Cécile Goubault, Marie Pellissier, Albert Johner, Fabrice Thalmann, Nam-Kyung Lee, Carlos M. Marques, Jérôme Bibette

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Physical Review Letters, 2008, 100, pp.108301. ⟨10.1103/PhysRevLett.100.108301⟩

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DOI : 10.1103/PhysRevLett.100.108301

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Ligand-Receptor Interactions in Chains of Colloids: When Reactions Are Limited by Rotational Diffusion

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Nam-Kyung Lee, Albert Johner, Fabrice Thalmann, Laetitia Cohen-Tannoudji, Emanuel Bertrand, Jean Baudry, Jérôme Bibette, Carlos M. Marques

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Langmuir, 2008, 24, pp.1296. ⟨10.1021/la701639n⟩

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DOI : 10.1021/la701639n

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Collision induced spatial organization of microtubules

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Vladimir A. Baulin, Carlos M. Marques, Fabrice Thalmann

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Biophysical Chemistry, 2007, 128 (2-3), pp.231. ⟨10.1016/j.bpc.2007.04.009⟩

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The dynamic behavior of microtubules in solution can be strongly modified by interactions with walls .....

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DOI : 10.1016/j.bpc.2007.04.009

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Trotter derivation of algorithms for Brownian and Dissipative Particle Dynamics.

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F. Thalmann, J. Farago

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The Journal of Chemical Physics, 2007, 127 (12), ⟨10.1063/1.2764481⟩

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DOI : 10.1063/1.2764481

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Predictions and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.

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A. Xayaphoummine, T. Bucher, F. Thalmann, H. Isambert

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Proceedings of the National Academy of Sciences of the United States of America, 2003, 100 ((26)), pp.15310-15315

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