Institut Charles Sadron Membre

Journal articles

titre

Non-ideal mixing of lipids: A molecular dynamics perspective

auteur

L. Berezovska, R. Kociurzynski, F. Thalmann

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The Journal of Chemical Physics, 2025, 162 (6), pp.065102. ⟨10.1063/5.0242522⟩

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Lipid membranes have complex compositions, and modeling the thermodynamic properties of multi-compon .....

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DOI : 10.1063/5.0242522

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Rotational and translational drags of a Janus particle close to a wall and a lipid membrane

auteur

Vaibhav Sharma, Florent Fessler, Fabrice Thalmann, Carlos Marques, Antonio Stocco

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Journal of Colloid and Interface Science, 2023, 652, pp.2159-2166. ⟨10.1016/j.jcis.2023.09.026⟩

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Hypothesis: Measuring rotational and translational Brownian motion of single spherical particles rev .....

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DOI : 10.1016/j.jcis.2023.09.026

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Internal lipid bilayer friction coefficient from equilibrium canonical simulations

auteur

Othmene Benazieb, Lisa Berezovska, Fabrice Thalmann

article

Journal of Physics Communications, 2023, 7 (1), pp.011001. ⟨10.1088/2399-6528/acb313⟩

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Abstract A fundamental result in the theory of Brownian motion is the Einstein-Sutherland relation b .....

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DOI : 10.1088/2399-6528/acb313

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Stress overshoot, hysteresis, and the Bauschinger effect in sheared dense colloidal suspensions

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Dmytro Kushnir, Céline Ruscher, Eckhard Bartsch, Fabrice Thalmann, Pascal Hebraud

article

Physical Review E , 2022, 106 (3), pp.034611. ⟨10.1103/PhysRevE.106.034611⟩

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The mechanical non-linear response of dense Brownian suspensions of polymer gel particles is studied .....

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DOI : 10.1103/PhysRevE.106.034611

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Coarse-grained description of monounsaturated peroxidized phospholipid bilayers

auteur

Yangyang Zhang, Donghui Liu, Yiyang Zhang, Yachong Guo, Wenfei Li, Fabrice Thalmann

article

The Journal of Chemical Physics, 2022, 157 (8), ⟨10.1063/5.0096658⟩

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Lipid peroxides result from a reaction between cis-unsaturated lipid chains and singlet oxygen molec .....

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DOI : 10.1063/5.0096658

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Perturbing the catenoid: stability and mechanical properties of non-axisymmetric minimal surfaces

auteur

Friedrich Walzel, Alice Requier, Kevin Boschi, Jean Farago, Philippe Fuchs, Fabrice Thalmann, Wiebke Drenckhan, Pierre Muller, Thierry Charitat

article

Physical Review E , 2022, 106 (1), pp.014803. ⟨10.1103/PhysRevE.106.014803⟩

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Minimal surface problems arise naturally in many soft matter systems whose free energies are dominat .....

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DOI : 10.1103/PhysRevE.106.014803

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titre

Rheology of sliding leaflets in coarse-grained DSPC lipid bilayers

auteur

Othmene Benazieb, Claire Loison, Fabrice Thalmann

article

Physical Review E , 2021, 104 (5), pp.054802. ⟨10.1103/PhysRevE.104.054802⟩

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Amphiphilic lipid bilayers modify the friction properties of the surfaces on top of which they are d .....

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DOI : 10.1103/PhysRevE.104.054802

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Ripple-like instability in the simulated gel phase of finite size phosphocholine bilayers

auteur

Vivien Walter, Céline Ruscher, Adrien Gola, Carlos M Marques, Olivier Benzerara, Fabrice Thalmann

article

Biochimica et Biophysica Acta:Biomembranes, 2021, 1863 (11), pp.183714. ⟨10.1016/j.bbamem.2021.183714⟩

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Atomistic molecular dynamics simulations have reached a degree of maturity that makes it possible to .....

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DOI : 10.1016/j.bbamem.2021.183714

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Molecular organization in hydroperoxidized POPC bilayers

auteur

Helena Junqueira, André Pierre Schroder, Fabrice Thalmann, Andrey Klymchenko, Yves Mély, Mauricio S Baptista, Carlos M Marques

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Biochimica et Biophysica Acta:Biomembranes, 2021, 1863 (10), pp.183659. ⟨10.1016/j.bbamem.2021.183659⟩

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DOI : 10.1016/j.bbamem.2021.183659

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MLLPA: A Machine Learning-assisted Python module to study phase-specific events in lipid membranes

auteur

Vivien Walter, Céline Ruscher, Olivier Benzerara, Fabrice Thalmann

article

Journal of Computational Chemistry, 2021, ⟨10.1002/jcc.26508⟩

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MLLPA is a new Python 3 module developed to analyse phase domains in a lipid membrane based on lipid .....

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DOI : 10.1002/jcc.26508

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titre

Accumulation of styrene oligomers alters lipid membrane phase order and miscibility

auteur

Mattia Morandi, Monika Kluzek, Jean Wolff, André Pierre Schroder, Fabrice Thalmann, Carlos Marques

article

Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), pp.e2016037118. ⟨10.1073/pnas.2016037118⟩

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Growth of plastic waste in the natural environment, and in particular in the oceans, has raised the .....

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DOI : 10.1073/pnas.2016037118

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titre

A machine learning study of the two states model for lipid bilayer phase transitions

auteur

Carlos M. Marques, Fabrice Thalmann, Vivien Walter, Céline Ruscher, Olivier Benzarara

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Physical Chemistry Chemical Physics, 2020, 22 (34), pp.19147-19154. ⟨10.1039/D0CP02058C⟩

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DOI : 10.1039/D0CP02058C

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Coarse-Grain Simulations of Solid Supported Lipid Bilayers with Varying Hydration Levels

auteur

Florian Benedetti, Li Fu, Fabrice Thalmann, Thierry Charitat, Anne Rubin, Claire Loison

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Journal of Physical Chemistry B, 2020, 124 (38), pp.8287-8298. ⟨10.1021/acs.jpcb.0c03913⟩

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Supported lipid bilayers (SLBs) are a very popular system for the study of biomimetic membranes. Und .....

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DOI : 10.1021/acs.jpcb.0c03913

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Fluid bilayer phase in aqueous mixtures of fatty alcohol and cationic surfactant

auteur

Tiago Espinosa, Fabien Leonforte, Luc Nicolas-Morgantini, Anne-Laure Fameau, Bernard Querleux, Fabrice Thalmann, Carlos M. Marques

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Physical Review Research, 2020, 2 (1), pp.013075. ⟨10.1103/PhysRevResearch.2.013075⟩

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Lamellar gel networks are creamy formulations extensively used in cosmetics and pharmaceutics. The b .....

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DOI : 10.1103/PhysRevResearch.2.013075

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Coarse-Grained Model of Oxidized Membranes and Their Interactions with Nanoparticles of Various Degrees of Hydrophobicity

auteur

Chan-Fei Su, Holger Merlitz, Fabrice Thalmann, Carlos M. Marques, Jens-Uwe Sommer

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Journal of Physical Chemistry C, 2019, 123 (11), pp.6839-6848. ⟨10.1021/acs.jpcc.8b11909⟩

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We investigate the consequences of lipid peroxidation on the permeation properties of membranes comp .....

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DOI : 10.1021/acs.jpcc.8b11909

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Interaction of Giant Unilamellar Vesicles with the Surface Nanostructures on Dragonfly Wings

auteur

Samuel Cheeseman, Vi Khanh Truong, Vivien Walter, Fabrice Thalmann, Carlos M. Marques, Eric Hanssen, Jitraporn Vongsvivut, Mark J Tobin, Vladimir Baulin, Saulius Juodkazis, Shane Maclaughlin, Gary Bryant, Russell J Crawford, Elena A. Ivanova

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Langmuir, 2019, 35 (6), pp.2422-2430. ⟨10.1021/acs.langmuir.8b03470⟩

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The waxy epicuticle of dragonfly wings contains a unique nanostructured pattern that exhibits bacter .....

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DOI : 10.1021/acs.langmuir.8b03470

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titre

Velocity of lateral drying fronts in film formation by drying of colloidal dispersions. A 2D simulation

auteur

M. Nassar, A. Gromer, F. Thalmann, P. Hébraud, Y. Holl

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Journal of Colloid and Interface Science, 2018, 511, pp.424-433. ⟨10.1016/j.jcis.2017.10.010⟩

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DOI : 10.1016/j.jcis.2017.10.010

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titre

Permeability of DOPC bilayers under photoinduced oxidation: Sensitivity to photosensitizer

auteur

Isabel O L Bacellar, Mauricio S Baptista, Helena C Junqueira, Mark Wainwright, Fabrice Thalmann, Carlos M. Marques, André P Schroder

article

Biochimica et Biophysica Acta:Biomembranes, 2018, 1860 (11), pp.2366-2373. ⟨10.1016/j.bbamem.2018.06.001⟩

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The modification of lipid bilayer permeability is one of the most striking yet poorly understood phy .....

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DOI : 10.1016/j.bbamem.2018.06.001

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DPPC Bilayers in Solutions of High Sucrose Content

auteur

Mattia Morandi, Mathieu Sommer, Monika Kluzek, Fabrice Thalmann, André P. Schroder, Carlos M. Marques

article

Biophysical Journal, 2018, 114 (9), pp.2165-2173. ⟨10.1016/j.bpj.2018.04.003⟩

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The properties of lipid bilayers in sucrose solutions have been intensely scrutinized over recent de .....

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DOI : 10.1016/j.bpj.2018.04.003

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titre

Kinetic evolution of DOPC lipid bilayers exposed to α-cyclodextrins

auteur

Monika Kluzek, Marc Schmutz, Carlos M. Marques, Fabrice Thalmann

article

Soft Matter, 2018, 14 (28), pp.5800-5810. ⟨10.1039/C8SM01013G⟩

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Cyclodextrins are cyclic oligosaccharides capable of forming inclusion complexes with a variety of m .....

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DOI : 10.1039/C8SM01013G

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titre

Simulation of Vertical Surfactant Distributions in Drying Latex Films

auteur

A. Gromer, F. Thalmann, P. Hébraud, Y. Holl

article

Langmuir, 2017, 33 (2), pp.561-572. ⟨10.1021/acs.langmuir.6b03913⟩

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DOI : 10.1021/acs.langmuir.6b03913

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titre

Horizontal drying fronts in films of colloidal dispersions: influence of hydrostatic pressure and collective diffusion

auteur

M. Nassar, A. Gromer, D. Favier, F. Thalmann, P. Hébraud, Y. Holl

article

Soft Matter, 2017, 13 (48), pp.9162-9173. ⟨10.1039/C7SM01334E⟩

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The origin and time evolution of heterogeneities in drying colloidal films is still a matter of deba .....

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DOI : 10.1039/C7SM01334E

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Influence of a pH-sensitive polymer on the structure of monoolein cubosomes

auteur

Monika Kluzek, Arwen Tyler, Shiqi Wang, Rongjun Chen, Carlos Marques, Fabrice Thalmann, John Seddon, Marc Schmutz

article

Soft Matter, 2017, 13 (41), pp.7571-7577. ⟨10.1039/C7SM01620D⟩

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Cubosomes consist in submicron size particles of lipid bicontinuous cubic phases stabilized by surfa .....

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DOI : 10.1039/C7SM01620D

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titre

Peroxidised phospholipid bilayers: insight from coarse-grained molecular dynamics simulations

auteur

Yachong Guo, Vladimir Baulin, Fabrice Thalmann

article

Soft Matter, 2016, 12 (1), pp.263-271. ⟨10.1039/C5SM01350J⟩

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An original coarse-grained model for peroxidised phospholipids is presented, based on the MARTINI li .....

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DOI : 10.1039/C5SM01350J

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titre

Simulation of Latex Film Formation Using a Cell Model in Real Space: Vertical Drying

auteur

A. Gromer, M. Nassar, F. Thalmann, P. Hébraud, Y. Holl

article

Langmuir, 2015, 31 (40), pp.10983-10994. ⟨10.1021/acs.langmuir.5b02845⟩

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DOI : 10.1021/acs.langmuir.5b02845

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Two-dimensional polymeric liquids and polymer stars: learning from conflicting theories

auteur

Albert Johner, Fabrice Thalmann, Jörg Baschnagel, Hendrik Meyer, Sergei Obukhov, Joachim Wittmer

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Journal of Statistical Mechanics: Theory and Experiment, 2014, 2014 (4), pp.P04024. ⟨10.1088/1742-5468/2014/04/P04024⟩

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We discuss systems for which two carefully derived, yet conflicting, theories coexisted. Dense polym .....

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DOI : 10.1088/1742-5468/2014/04/P04024

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Physical Damage on Giant Vesicles Membrane as a Result of Methylene Blue Photoirradiation

auteur

Omar Mertins, Isabel o.L. Bacellar, Fabrice Thalmann, Carlos m. Marques, Maurício s. Baptista, Rosangela Itri

article

Biophysical Journal, 2014, 106 (1), pp.162-171. ⟨10.1016/j.bpj.2013.11.4457⟩

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DOI : 10.1016/j.bpj.2013.11.4457

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Lipid bilayer adhesion on sparse DNA carpets: Theoretical analysis of membrane deformations induced by single-end-grafted polymers

auteur

F. Thalmann, V. Billot, C. Marques

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Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2011, 83 (6), pp.061922. ⟨10.1103/PhysRevE.83.061922⟩

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We consider a single end-grafted polymer chain covered by a membrane in contact with a flat and rigi .....

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DOI : 10.1103/PhysRevE.83.061922

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Thermodynamic Approach to Phase Coexistence in Ternary Phospholipid-Cholesterol Mixtures

auteur

Jean Wolff, Carlos Marques, Fabrice Thalmann

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Physical Review Letters, 2011, 106, pp.128104. ⟨10.1103/PhysRevLett.106.128104⟩

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We introduce a simple and predictive model for determining the phase stability of ternary phospholip .....

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DOI : 10.1103/PhysRevLett.106.128104

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Enhanced shear separation for chiral magnetic colloidal aggregates

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C. Mendoza, C. Marques, F. Thalmann

article

Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2010, 82 (6), pp.060401. ⟨10.1103/PhysRevE.82.060401⟩

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We study the designing principles of the simplest colloidal propeller, an architecture built from fo .....

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DOI : 10.1103/PhysRevE.82.060401

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Scraping and Stapling of End-Grafted DNA Chains by a Bioadhesive Spreading Vesicle to Reveal Chain Internal Friction and Topological Complexity

auteur

Gi-Moon Nam, Marie Laure Hisette, Yuting Liang Sun, Thomas Gisler, Albert Johner, Fabrice Thalmann, André Schroder, Carlos Marques, Nam-Kyung Lee

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Physical Review Letters, 2010, 105 (8), ⟨10.1103/PhysRevLett.105.088101⟩

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Stained end-grafted DNA molecules about 20 μm long are scraped away and stretched out by the spread .....

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DOI : 10.1103/PhysRevLett.105.088101

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Surfactant Distribution in Waterborne Acrylic Films. 1. Bulk Investigation

auteur

Céline Arnold, Fabrice Thalmann, Carlos Marques, Pascal Marie, Yves Holl

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Journal of Physical Chemistry B, 2010, 114 (28), pp.9135-9147. ⟨10.1021/jp103347n⟩

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The distribution of an anionic surfactant, sodium dodecyl sulfate (SDS), in waterborne acrylic films .....

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DOI : 10.1021/jp103347n

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A schematic model for molecular affinity and binding with Ising variables

auteur

Fabrice Thalmann

article

European Physical Journal E: Soft matter and biological physics, 2010, 31 (4), pp.441-454. ⟨10.1140/epje/i2010-10600-9⟩

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After discussing the relevance of statistical physics in molecular recognition processes, we present .....

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DOI : 10.1140/epje/i2010-10600-9

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Fast algorithms for classical X→0 diffusion-reaction processes

auteur

Fabrice Thalmann, Nam-Kyung Lee

article

J Chem Phys, 2009, 130 (7), pp.074102. ⟨10.1063/1.3072706⟩

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The Doi formalism treats a reaction-diffusion process as a quantum many-body problem. We use this se .....

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DOI : 10.1063/1.3072706

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Fast algorithms for classical X—>0 diffusion-reaction processes

auteur

Fabrice Thalmann, Nam-Kyung Lee

article

The Journal of Chemical Physics, 2009, 130 (7), pp.074102

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Measuring the Kinetics of Biomolecular Recognition with Magnetic Colloids

auteur

Laetitia Cohen-Tannoudji, Emanuel Bertrand, Jean Baudry, Caroline Robic, Cécile Goubault, Marie Pellissier, Albert Johner, Fabrice Thalmann, Nam-Kyung Lee, Carlos M. Marques, Jérôme Bibette

article

Physical Review Letters, 2008, 100, pp.108301. ⟨10.1103/PhysRevLett.100.108301⟩

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DOI : 10.1103/PhysRevLett.100.108301

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Ligand-Receptor Interactions in Chains of Colloids: When Reactions Are Limited by Rotational Diffusion

auteur

Nam-Kyung Lee, Albert Johner, Fabrice Thalmann, Laetitia Cohen-Tannoudji, Emanuel Bertrand, Jean Baudry, Jérôme Bibette, Carlos M. Marques

article

Langmuir, 2008, 24, pp.1296. ⟨10.1021/la701639n⟩

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DOI : 10.1021/la701639n

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Collision induced spatial organization of microtubules

auteur

Vladimir A. Baulin, Carlos M. Marques, Fabrice Thalmann

article

Biophysical Chemistry, 2007, 128 (2-3), pp.231. ⟨10.1016/j.bpc.2007.04.009⟩

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The dynamic behavior of microtubules in solution can be strongly modified by interactions with walls .....

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DOI : 10.1016/j.bpc.2007.04.009

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Trotter derivation of algorithms for Brownian and Dissipative Particle Dynamics.

auteur

F. Thalmann, J. Farago

article

The Journal of Chemical Physics, 2007, 127 (12), ⟨10.1063/1.2764481⟩

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DOI : 10.1063/1.2764481

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Predictions and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.

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A. Xayaphoummine, T. Bucher, F. Thalmann, H. Isambert

article

Proceedings of the National Academy of Sciences of the United States of America, 2003, 100 ((26)), pp.15310-15315

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Activated drift motion of a classical particle with a dynamical pinning effect

auteur

F. Thalmann

article

The European Physical Journal B: Condensed Matter and Complex Systems, 1998, 3 (4), pp.497-505. ⟨10.1007/s100510050340⟩

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DOI : 10.1007/s100510050340

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